RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g39670.1 View Network Show in Genome Browser |
| Other Names | Os11g0610900 |
| Description | seryl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 23623013-23625543 Nucleotide Length: 1530 |
| Protein-coding | LOC_Os11g39670 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g19850 LOC_Os08g42560 LOC_Os05g05840 LOC_Os09g26180 LOC_Os03g10190 LOC_Os01g37837 LOC_Os02g07040 LOC_Os04g32650 LOC_Os11g29400 LOC_Os06g02144 LOC_Os04g41510 More.. |
| Downstream Genes | LOC_Os12g25710 LOC_Os11g42160 LOC_Os11g40150 LOC_Os12g31370 LOC_Os12g38900 LOC_Os12g10670 LOC_Os12g19180 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY PWY0-901 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g39670.1 |
| Rice Genome Annotation | LOC_Os11g39670.1 |
| Ricechip | LOC_Os11g39670.1 |
| KEGG | osa:4350906 dosa:Os11t0610900-01 |
| Entrez-Gene | 4350906 |