RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g41160.1 View Network Show in Genome Browser |
| Other Names | Os11g0629500 |
| Description | phosphoserine phosphatase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 24651943-24653182 Nucleotide Length: 891 |
| Protein-coding | LOC_Os11g41160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g28750 LOC_Os01g19840 LOC_Os08g34720 LOC_Os03g06200 LOC_Os04g55720 LOC_Os06g44460 LOC_Os05g38520 LOC_Os01g62350 LOC_Os04g31960 LOC_Os04g32010 LOC_Os06g15420 More.. |
| Downstream Genes | LOC_Os12g38000 LOC_Os12g03090 LOC_Os12g13320 LOC_Os12g43600 LOC_Os12g04440 LOC_Os12g07010 LOC_Os12g44150 LOC_Os12g31800 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn00680 rn01100 rn01120 |
| Metacyc Pathways | SERSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g41160.1 |
| Rice Genome Annotation | LOC_Os11g41160.1 |
| Ricechip | LOC_Os11g41160.1 |
| KEGG | osa:4350964 dosa:Os11t0629500-01 |
| Entrez-Gene | 4350964 |