RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g42420.1 View Network Show in Genome Browser |
| Other Names | Os11g0643700 |
| Description | nuclear pore protein 84/107 containing protein, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 25522647-25526265 Nucleotide Length: 3267 |
| Protein-coding | LOC_Os11g42420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07580 LOC_Os02g10790 LOC_Os02g04320 LOC_Os03g22690 LOC_Os01g10350 LOC_Os08g07960 LOC_Os03g18180 LOC_Os01g54240 LOC_Os02g43760 LOC_Os06g20090 LOC_Os08g01054 More.. |
| Downstream Genes | LOC_Os12g06890 LOC_Os12g06870 LOC_Os12g38110 LOC_Os12g03540 LOC_Os12g07720 LOC_Os11g43620 LOC_Os11g48090 LOC_Os12g44390 LOC_Os12g31370 LOC_Os12g42700 |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g42420.1 |
| Rice Genome Annotation | LOC_Os11g42420.1 |
| Ricechip | LOC_Os11g42420.1 |
| KEGG | osa:4351012 dosa:Os11t0643700-01 |
| Entrez-Gene | 4351012 |