RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os11g47840.1 View Network Show in Genome Browser |
| Other Names | Os11g0704800 |
| Description | OsRhmbd18 - Putative Rhomboid homologue, expressed |
| Gene Attributes | Chromosome: Chr11 CDS Coordinates (5'-3'): 28853507-28857521 Nucleotide Length: 1125 |
| Protein-coding | LOC_Os11g47840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55740 LOC_Os01g18100 LOC_Os01g67040 LOC_Os01g59790 LOC_Os07g34520 LOC_Os01g54520 LOC_Os01g45620 LOC_Os01g69850 LOC_Os02g56560 LOC_Os02g40860 LOC_Os10g33650 More.. |
| Downstream Genes | LOC_Os12g38860 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os11g47840.1 |
| Rice Genome Annotation | LOC_Os11g47840.1 |
| Ricechip | LOC_Os11g47840.1 |
| KEGG | osa:4351216 dosa:Os11t0704800-01 |
| Entrez-Gene | 4351216 |