RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g01190.2 View Network Show in Genome Browser |
| Other Names | Os12g0102400 |
| Description | RNA recognition motif containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 105922-112632 Nucleotide Length: 3291 |
| Protein-coding | LOC_Os12g01190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g40780 LOC_Os03g07080 LOC_Os10g27230 LOC_Os02g55300 LOC_Os02g54120 LOC_Os03g52594 LOC_Os03g44900 LOC_Os01g34190 LOC_Os05g48960 LOC_Os02g35150 LOC_Os09g24990 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os12g43600 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5150-3p |
| Reference | |
|---|---|
| PubMed | 22705026 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g01190.2 |
| Rice Genome Annotation | LOC_Os12g01190.2 |
| Ricechip | LOC_Os12g01190.2 |
| KEGG | osa:4351244 dosa:Os12t0102400-01 |
| Entrez-Gene | 4351244 |