RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g01710.1 View Network Show in Genome Browser |
| Other Names | Os12g0107866,Os12g0107800 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 422126-425359 Nucleotide Length: 1377 |
| Protein-coding | LOC_Os12g01710 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g35290 LOC_Os03g44484 LOC_Os04g54840 LOC_Os03g28960 LOC_Os05g22830 LOC_Os08g07480 LOC_Os04g16820 LOC_Os05g22860 LOC_Os03g52400 LOC_Os05g49320 LOC_Os05g48050 More.. |
| Downstream Genes | LOC_Os12g04510 LOC_Os12g33240 LOC_Os12g30490 LOC_Os12g42180 LOC_Os12g04160 LOC_Os12g38000 LOC_Os12g07010 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g01710.1 |
| Rice Genome Annotation | LOC_Os12g01710.1 |
| Ricechip | LOC_Os12g01710.1 |