RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g02390.1 View Network Show in Genome Browser |
| Other Names | Os12g0116000 |
| Description | vacuolar-sorting receptor precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 783540-788120 Nucleotide Length: 2187 |
| Protein-coding | LOC_Os12g02390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07820 LOC_Os03g52150 LOC_Os04g51120 LOC_Os02g24134 LOC_Os01g53670 LOC_Os03g53630 LOC_Os02g58730 LOC_Os02g20850 LOC_Os03g47500 LOC_Os06g07830 LOC_Os02g55970 More.. |
| Downstream Genes | LOC_Os12g43930 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1320-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g02390.1 |
| Rice Genome Annotation | LOC_Os12g02390.1 |
| Ricechip | LOC_Os12g02390.1 |
| KEGG | osa:4351323 dosa:Os12t0116000-01 |
| Entrez-Gene | 4351323 |