RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g02730.1 View Network Show in Genome Browser |
| Other Names | Os12g0120200 |
| Description | histidine triad family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 964545-966927 Nucleotide Length: 621 |
| Protein-coding | LOC_Os12g02730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g35090 LOC_Os02g34460 LOC_Os02g28810 LOC_Os04g50990 LOC_Os01g73160 LOC_Os02g47140 LOC_Os07g05580 LOC_Os04g28180 LOC_Os07g12650 LOC_Os06g04290 LOC_Os03g14530 More.. |
| Downstream Genes | LOC_Os12g03880 LOC_Os12g03090 LOC_Os12g35320 LOC_Os12g06670 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 rn00630 |
| Metacyc Pathways | CALVIN-PWY PWY-5532 PWY-5723 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g02730.1 |
| Rice Genome Annotation | LOC_Os12g02730.1 |
| Ricechip | LOC_Os12g02730.1 |
| KEGG | osa:4351353 dosa:Os12t0120200-01 |
| Entrez-Gene | 4351353 |