RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g02980.1 View Network Show in Genome Browser |
| Other Names | Os12g0123500 |
| Description | nucleoside-triphosphatase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1107401-1110538 Nucleotide Length: 1356 |
| Protein-coding | LOC_Os12g02980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g02700 LOC_Os04g55960 LOC_Os07g40580 LOC_Os11g03400 LOC_Os09g32976 LOC_Os08g23710 LOC_Os02g58510 LOC_Os08g22354 LOC_Os03g55150 LOC_Os06g37440 LOC_Os07g02210 More.. |
| Downstream Genes | LOC_Os12g03090 LOC_Os12g32240 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5160 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g02980.1 |
| Rice Genome Annotation | LOC_Os12g02980.1 |
| Ricechip | LOC_Os12g02980.1 |
| KEGG | osa:4351367 dosa:Os12t0123500-01 |
| Entrez-Gene | 4351367 |