RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g03816.1 View Network Show in Genome Browser |
| Other Names | Os12g0132300 |
| Description | OsCML3 - Calmodulin-related calcium sensor protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1559859-1561568 Nucleotide Length: 552 |
| Protein-coding | LOC_Os12g03816 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g48140 LOC_Os02g55880 LOC_Os02g10740 LOC_Os06g51250 LOC_Os06g29350 LOC_Os03g59590 LOC_Os08g25010 LOC_Os08g44390 LOC_Os06g40200 LOC_Os03g53660 LOC_Os01g62570 More.. |
| Downstream Genes | LOC_Os12g37560 LOC_Os12g12860 LOC_Os12g04240 |
| Reference | |
|---|---|
| PubMed | 21908855 17263873 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g03816.1 |
| Rice Genome Annotation | LOC_Os12g03816.1 |
| Ricechip | LOC_Os12g03816.1 |
| KEGG | osa:4351420 dosa:Os12t0132300-02 |
| Entrez-Gene | 4351420 |