RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04020.1 View Network Show in Genome Browser |
| Other Names | Os12g0134000 |
| Description | hydroxymethylglutaryl-CoA lyase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1671493-1675232 Nucleotide Length: 1164 |
| Protein-coding | LOC_Os12g04020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g32850 LOC_Os11g04210 LOC_Os05g03480 LOC_Os10g21910 LOC_Os05g22940 LOC_Os09g07830 |
| Downstream Genes | LOC_Os12g41250 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00072 rn00280 rn00650 rn01100 rn00281 rn01110 |
| Metacyc Pathways | LEU-DEG2-PWY PWY-5074 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04020.1 |
| Rice Genome Annotation | LOC_Os12g04020.1 |
| Ricechip | LOC_Os12g04020.1 |
| KEGG | osa:4351434 dosa:Os12t0134000-02 |
| Entrez-Gene | 4351434 |