RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04120.1 View Network Show in Genome Browser |
| Other Names | Os12g0135100 |
| Description | phosphoglycerate mutase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1727837-1730565 Nucleotide Length: 753 |
| Protein-coding | LOC_Os12g04120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18310 LOC_Os05g07130 LOC_Os02g51590 LOC_Os06g11960 LOC_Os06g01950 LOC_Os04g01230 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00260 rn00680 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS PWY-2221 PWY-1622 PWY-6142 PWY-5484 ANAGLYCOLYSIS-PWY P341-PWY P122-PWY PWY-5723 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04120.1 |
| Rice Genome Annotation | LOC_Os12g04120.1 |
| Ricechip | LOC_Os12g04120.1 |
| KEGG | dosa:Os12t0135100-00 |