RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04260.1 View Network Show in Genome Browser |
| Other Names | Os12g0137200 |
| Description | astaxanthin synthase KC28, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1802706-1807516 Nucleotide Length: 1284 |
| Protein-coding | LOC_Os12g04260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g40620 LOC_Os02g54254 LOC_Os11g04490 LOC_Os12g02550 LOC_Os11g02630 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | PWY-2582 ARO-PWY LYSINE-DEG1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04260.1 |
| Rice Genome Annotation | LOC_Os12g04260.1 |
| Ricechip | LOC_Os12g04260.1 |
| KEGG | osa:4351451 dosa:Os12t0137200-01 |
| Entrez-Gene | 4351451 |