RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04424.1 View Network Show in Genome Browser |
| Other Names | Os12g0138800 |
| Description | strictosidine synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1882578-1888289 Nucleotide Length: 1293 |
| Protein-coding | LOC_Os12g04424 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os11g04660 LOC_Os09g25310 LOC_Os01g70140 LOC_Os03g51250 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-5290 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04424.1 |
| Rice Genome Annotation | LOC_Os12g04424.1 |
| Ricechip | LOC_Os12g04424.1 |
| KEGG | osa:4351459 dosa:Os12t0138800-01 |
| Entrez-Gene | 4351459 |