RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04440.1 View Network Show in Genome Browser |
| Other Names | Os12g0138900 |
| Description | 2-isopropylmalate synthase B, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 1888943-1894920 Nucleotide Length: 1908 |
| Protein-coding | LOC_Os12g04440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56110 LOC_Os02g56130 LOC_Os03g56140 LOC_Os05g49800 LOC_Os11g14950 LOC_Os02g39570 LOC_Os03g45320 LOC_Os03g42110 LOC_Os01g46380 LOC_Os04g35060 LOC_Os05g44340 More.. |
| Downstream Genes | LOC_Os12g13320 LOC_Os12g07300 LOC_Os12g41400 LOC_Os12g07740 LOC_Os12g38000 LOC_Os12g21798 LOC_Os12g34874 LOC_Os12g31820 LOC_Os12g07010 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00290 rn00620 rn01100 rn01110 rn01210 |
| Metacyc Pathways | LEUSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04440.1 |
| Rice Genome Annotation | LOC_Os12g04440.1 |
| Ricechip | LOC_Os12g04440.1 |
| KEGG | osa:4351460 dosa:Os12t0138900-01 |
| Entrez-Gene | 4351460 |