RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g04990.1 View Network Show in Genome Browser |
| Other Names | Os12g0143900 |
| Description | acyl-CoA synthetase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 2161548-2170074 Nucleotide Length: 2124 |
| Protein-coding | LOC_Os12g04990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g25310 LOC_Os01g51170 LOC_Os01g73530 LOC_Os02g32490 LOC_Os05g01700 LOC_Os04g33190 LOC_Os06g02160 LOC_Os08g44240 LOC_Os04g58090 LOC_Os08g03350 LOC_Os05g19370 More.. |
| Downstream Genes | LOC_Os12g07110 LOC_Os12g36760 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00071 rn01100 |
| Metacyc Pathways | PWY-5143 PWY-5136 FAO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g04990.1 |
| Rice Genome Annotation | LOC_Os12g04990.1 |
| Ricechip | LOC_Os12g04990.1 |
| KEGG | osa:4351483 dosa:Os12t0143900-01 |
| Entrez-Gene | 4351483 |