RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g05050.1 View Network Show in Genome Browser |
| Other Names | Os12g0145100 |
| Description | stem-specific protein TSJT1, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 2215862-2219491 Nucleotide Length: 717 |
| Protein-coding | LOC_Os12g05050 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g34520 LOC_Os07g31270 LOC_Os03g16740 LOC_Os09g08660 LOC_Os05g40270 LOC_Os04g41340 LOC_Os04g35480 |
| Downstream Genes | LOC_Os12g23150 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g05050.1 |
| Rice Genome Annotation | LOC_Os12g05050.1 |
| Ricechip | LOC_Os12g05050.1 |
| KEGG | osa:4351488 dosa:Os12t0145100-01 |
| Entrez-Gene | 4351488 |