RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os12g06570.1 View Network Show in Genome Browser
Other Names	Os12g0163100,Os12g0163000
Description	cyclic nucleotide-gated ion channel, putative, expressed
Gene Attributes	Chromosome: Chr12 CDS Coordinates (5'-3'): 3186847-3190002 Nucleotide Length: 1890
Protein-coding	LOC_Os12g06570

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0019725	cellular homeostasis	Biological Process	IEA
GO:0019725	cellular homeostasis	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0009856	pollination	Biological Process	IEA
GO:0009856	pollination	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0006810	transport	Biological Process	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0005215	transporter activity	Molecular Function	IEA
GO:0005886	plasma membrane	Cellular Component	IEA
GO:0005886	plasma membrane	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g48680 LOC_Os07g01810 LOC_Os03g54100 LOC_Os09g12790 LOC_Os04g42490 LOC_Os11g07040 LOC_Os02g36974 LOC_Os03g57450 LOC_Os03g57510 LOC_Os02g46090 LOC_Os04g49510 More..
Downstream Genes	LOC_Os12g07230 LOC_Os12g30150 LOC_Os12g28260 LOC_Os12g19290 LOC_Os12g12860

Database Links
Gramene	LOC_Os12g06570.1
Rice Genome Annotation	LOC_Os12g06570.1
Ricechip	LOC_Os12g06570.1
KEGG	osa:4351579 dosa:Os12t0163100-00 dosa:Os12t0163000-00