RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07480.1 View Network Show in Genome Browser |
| Other Names | Os12g0173300 |
| Description | TCP family transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 3709752-3711796 Nucleotide Length: 1257 |
| Protein-coding | LOC_Os12g07480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g05720 LOC_Os05g43760 LOC_Os01g11550 LOC_Os02g35770 LOC_Os05g05860 LOC_Os01g45570 LOC_Os07g33660 LOC_Os01g06500 LOC_Os10g32300 LOC_Os03g21940 LOC_Os05g50270 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2873a |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07480.1 |
| Rice Genome Annotation | LOC_Os12g07480.1 |
| Ricechip | LOC_Os12g07480.1 |
| KEGG | dosa:Os12t0173300-00 |