RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07590.2 View Network Show in Genome Browser |
| Other Names | Os12g0174800 |
| Description | Protein-tyrosine phosphatase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 3792401-3797497 Nucleotide Length: 987 |
| Protein-coding | LOC_Os12g07590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g06090 LOC_Os03g17700 LOC_Os02g08364 LOC_Os02g05630 LOC_Os06g12580 LOC_Os11g04180 LOC_Os06g44210 LOC_Os12g03990 LOC_Os06g48300 LOC_Os04g56450 LOC_Os10g38950 More.. |
| Downstream Genes | LOC_Os12g21890 LOC_Os12g12860 LOC_Os12g09000 LOC_Os12g43340 LOC_Os12g43630 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07590.2 |
| Rice Genome Annotation | LOC_Os12g07590.2 |
| Ricechip | LOC_Os12g07590.2 |
| KEGG | osa:4351645 dosa:Os12t0174800-01 |
| Entrez-Gene | 4351645 |