RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07720.1 View Network Show in Genome Browser |
| Other Names | Os12g0176500 |
| Description | RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 3873350-3877349 Nucleotide Length: 1020 |
| Protein-coding | LOC_Os12g07720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g57870 LOC_Os02g53500 LOC_Os11g36390 LOC_Os02g56130 LOC_Os03g13850 LOC_Os05g29010 LOC_Os02g08380 LOC_Os04g48060 LOC_Os11g08330 LOC_Os04g39444 LOC_Os04g51920 More.. |
| Downstream Genes | LOC_Os12g28177 LOC_Os12g28137 LOC_Os12g28590 LOC_Os12g13950 LOC_Os12g28550 LOC_Os12g37400 LOC_Os12g10560 LOC_Os12g44190 LOC_Os12g24320 LOC_Os12g09540 LOC_Os12g28710 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07720.1 |
| Rice Genome Annotation | LOC_Os12g07720.1 |
| Ricechip | LOC_Os12g07720.1 |
| KEGG | osa:4351654 dosa:Os12t0176500-01 |
| Entrez-Gene | 4351654 |