RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07730.1 View Network Show in Genome Browser |
| Other Names | Os12g0176700 |
| Description | SWIRM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 3879354-3885325 Nucleotide Length: 2520 |
| Protein-coding | LOC_Os12g07730 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os11g32900 LOC_Os05g05230 LOC_Os08g42600 LOC_Os02g13130 LOC_Os02g49190 LOC_Os02g14780 LOC_Os01g51154 LOC_Os04g31000 LOC_Os05g09620 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR820a osa-miR820b osa-miR820c |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07730.1 |
| Rice Genome Annotation | LOC_Os12g07730.1 |
| Ricechip | LOC_Os12g07730.1 |
| KEGG | dosa:Os12t0176700-00 |