RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g07950.1 View Network Show in Genome Browser |
| Other Names | Os12g0179800 |
| Description | transcriptional regulator Sir2 family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 4032212-4036968 Nucleotide Length: 1182 |
| Protein-coding | LOC_Os12g07950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g22220 LOC_Os10g43040 LOC_Os04g35060 LOC_Os02g30840 LOC_Os08g06600 LOC_Os03g38010 LOC_Os07g06980 LOC_Os03g62110 LOC_Os11g08940 LOC_Os03g08640 LOC_Os05g23940 More.. |
| Downstream Genes | LOC_Os12g09280 LOC_Os12g08280 LOC_Os12g08270 LOC_Os12g41180 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5538 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g07950.1 |
| Rice Genome Annotation | LOC_Os12g07950.1 |
| Ricechip | LOC_Os12g07950.1 |
| KEGG | osa:4351669 dosa:Os12t0179800-01 |
| Entrez-Gene | 4351669 |