RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g08170.1 View Network Show in Genome Browser |
| Other Names | Os12g0182200 |
| Description | 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 4171977-4176907 Nucleotide Length: 1404 |
| Protein-coding | LOC_Os12g08170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g33500 LOC_Os08g42410 LOC_Os03g44300 LOC_Os06g13720 LOC_Os02g50620 LOC_Os04g02900 LOC_Os05g06460 LOC_Os06g09630 LOC_Os10g37180 LOC_Os02g07410 LOC_Os03g18590 More.. |
| Downstream Genes | LOC_Os12g42230 LOC_Os12g41250 LOC_Os12g08260 LOC_Os12g40450 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00020 rn00620 rn01110 rn01120 |
| Metacyc Pathways | PYRUVDEHYD-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g08170.1 |
| Rice Genome Annotation | LOC_Os12g08170.1 |
| Ricechip | LOC_Os12g08170.1 |
| KEGG | osa:4351678 dosa:Os12t0182200-01 |
| Entrez-Gene | 4351678 |