RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g08770.1 View Network Show in Genome Browser |
| Other Names | Os12g0189400 |
| Description | photosystem I reaction center subunit N, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 4506723-4507879 Nucleotide Length: 450 |
| Protein-coding | LOC_Os12g08770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48630 LOC_Os04g33830 LOC_Os08g33820 LOC_Os07g37240 LOC_Os03g09220 LOC_Os02g47020 LOC_Os11g13890 LOC_Os02g37060 LOC_Os09g30340 LOC_Os07g32880 LOC_Os02g10390 More.. |
| Downstream Genes | LOC_Os12g19381 LOC_Os12g19470 LOC_Os12g23200 LOC_Os12g34890 LOC_Os12g23180 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g08770.1 |
| Rice Genome Annotation | LOC_Os12g08770.1 |
| Ricechip | LOC_Os12g08770.1 |
| KEGG | osa:4351694 dosa:Os12t0189400-01 |
| Entrez-Gene | 4351694 |