RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g09290.1 View Network Show in Genome Browser |
| Other Names | Os12g0194800 |
| Description | tRNA pseudouridine synthase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 4863260-4875233 Nucleotide Length: 1176 |
| Protein-coding | LOC_Os12g09290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g44810 LOC_Os02g16630 LOC_Os03g21980 LOC_Os08g04180 LOC_Os03g58290 LOC_Os03g45320 LOC_Os03g58320 LOC_Os03g58300 LOC_Os03g54890 LOC_Os07g08430 LOC_Os05g33230 More.. |
| Downstream Genes | LOC_Os12g42870 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g09290.1 |
| Rice Genome Annotation | LOC_Os12g09290.1 |
| Ricechip | LOC_Os12g09290.1 |
| KEGG | osa:4351716 dosa:Os12t0194800-01 |
| Entrez-Gene | 4351716 |