RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g09540.1 View Network Show in Genome Browser |
| Other Names | Os12g0197100 |
| Description | phosphoribosylamine--glycine ligase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 5013789-5018312 Nucleotide Length: 1557 |
| Protein-coding | LOC_Os12g09540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g10570 LOC_Os05g01440 LOC_Os01g66500 LOC_Os01g65260 LOC_Os05g35580 LOC_Os08g39160 LOC_Os01g72240 LOC_Os09g29190 LOC_Os01g38970 LOC_Os05g18790 LOC_Os12g07720 More.. |
| Downstream Genes | LOC_Os12g25710 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn01110 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g09540.1 |
| Rice Genome Annotation | LOC_Os12g09540.1 |
| Ricechip | LOC_Os12g09540.1 |
| KEGG | osa:4351721 dosa:Os12t0197100-01 |
| Entrez-Gene | 4351721 |