RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g10540.1 View Network Show in Genome Browser |
| Other Names | Os12g0207000 |
| Description | OsMADS13 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 5584593-5590285 Nucleotide Length: 813 |
| Protein-coding | LOC_Os12g10540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01820 LOC_Os11g40100 LOC_Os03g54160 LOC_Os11g10100 LOC_Os07g41370 LOC_Os06g08380 LOC_Os01g55040 LOC_Os09g12800 LOC_Os07g19560 LOC_Os08g41950 LOC_Os07g37510 More.. |
| Downstream Genes | LOC_Os12g31350 |
| Reference | |
|---|---|
| PubMed | 21810995 21444646 17640358 21784949 17877710 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g10540.1 |
| Rice Genome Annotation | LOC_Os12g10540.1 |
| Ricechip | LOC_Os12g10540.1 |
| KEGG | osa:4351753 dosa:Os12t0207000-01 |
| Entrez-Gene | 4351753 |