RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g12850.1 View Network Show in Genome Browser |
| Other Names | Os12g0230100 |
| Description | ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 7095797-7101612 Nucleotide Length: 2760 |
| Protein-coding | LOC_Os12g12850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39630 LOC_Os03g07380 LOC_Os08g44210 LOC_Os06g06100 LOC_Os05g08950 LOC_Os09g38759 LOC_Os07g42632 LOC_Os04g16820 LOC_Os06g43280 LOC_Os04g56970 LOC_Os01g62500 More.. |
| Downstream Genes | LOC_Os12g28460 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5145 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g12850.1 |
| Rice Genome Annotation | LOC_Os12g12850.1 |
| Ricechip | LOC_Os12g12850.1 |
| KEGG | osa:4351828 dosa:Os12t0230100-01 |
| Entrez-Gene | 4351828 |