RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g12934.1 View Network Show in Genome Browser |
| Other Names | Os12g0231000 |
| Description | peptide transporter PTR3-A, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 7165805-7171026 Nucleotide Length: 1752 |
| Protein-coding | LOC_Os12g12934 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g42280 LOC_Os03g29350 LOC_Os03g56110 LOC_Os03g56140 LOC_Os07g03770 LOC_Os10g30090 LOC_Os03g45170 LOC_Os04g01590 LOC_Os03g51690 LOC_Os03g51710 |
| Downstream Genes | LOC_Os12g39400 LOC_Os12g42850 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g12934.1 |
| Rice Genome Annotation | LOC_Os12g12934.1 |
| Ricechip | LOC_Os12g12934.1 |
| KEGG | osa:4351831 dosa:Os12t0231000-01 |
| Entrez-Gene | 4351831 |