RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g13950.1 View Network Show in Genome Browser |
| Other Names | Os12g0242900 |
| Description | POLA2 - Putative DNA polymerase alpha complex subunit, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 7921635-7926719 Nucleotide Length: 1875 |
| Protein-coding | LOC_Os12g13950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g64820 LOC_Os03g03650 LOC_Os05g06840 LOC_Os05g29010 LOC_Os07g22400 LOC_Os09g34850 LOC_Os02g53680 LOC_Os01g63710 LOC_Os12g03130 LOC_Os11g03430 LOC_Os05g46270 More.. |
| Downstream Genes | LOC_Os12g37400 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1860-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g13950.1 |
| Rice Genome Annotation | LOC_Os12g13950.1 |
| Ricechip | LOC_Os12g13950.1 |
| KEGG | osa:4351872 dosa:Os12t0242900-01 |
| Entrez-Gene | 4351872 |