RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g17320.1 View Network Show in Genome Browser |
| Other Names | Os12g0271700 |
| Description | polyprenyl synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 9915292-9922660 Nucleotide Length: 1245 |
| Protein-coding | LOC_Os12g17320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g31228 LOC_Os08g31219 LOC_Os04g25540 LOC_Os01g50760 LOC_Os05g46580 LOC_Os02g15900 LOC_Os01g69950 LOC_Os04g34130 LOC_Os08g06230 LOC_Os03g58540 LOC_Os11g47800 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2929 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01110 rn01100 |
| Metacyc Pathways | PWY-5805 PWY-5123 POLYISOPRENSYN-PWY PWY-5121 PWY-5122 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g17320.1 |
| Rice Genome Annotation | LOC_Os12g17320.1 |
| Ricechip | LOC_Os12g17320.1 |
| KEGG | osa:4351957 dosa:Os12t0271700-02 |
| Entrez-Gene | 4351957 |