RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g18200.1 View Network Show in Genome Browser |
| Other Names | Os12g0279600 |
| Description | endonuclease/exonuclease/phosphatase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 10506833-10515806 Nucleotide Length: 1140 |
| Protein-coding | LOC_Os12g18200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g15410 LOC_Os10g28660 LOC_Os07g07950 LOC_Os05g41000 LOC_Os02g51600 LOC_Os01g51890 LOC_Os08g41270 LOC_Os03g07080 LOC_Os01g42490 LOC_Os09g36530 LOC_Os03g13520 More.. |
| Downstream Genes | LOC_Os12g22620 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g18200.1 |
| Rice Genome Annotation | LOC_Os12g18200.1 |
| Ricechip | LOC_Os12g18200.1 |
| KEGG | osa:4351982 dosa:Os12t0279600-01 |
| Entrez-Gene | 4351982 |