RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g18900.1 View Network Show in Genome Browser |
| Other Names | Os12g0287300 |
| Description | aminotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 10963340-10974343 Nucleotide Length: 1410 |
| Protein-coding | LOC_Os12g18900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g21490 LOC_Os01g61400 LOC_Os08g39300 LOC_Os03g06200 LOC_Os05g31080 LOC_Os01g47340 LOC_Os05g49300 LOC_Os01g31610 LOC_Os10g08010 LOC_Os04g33610 LOC_Os04g50864 More.. |
| Downstream Genes | LOC_Os12g30030 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2104 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00450 rn01100 |
| Metacyc Pathways | PWY0-1021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g18900.1 |
| Rice Genome Annotation | LOC_Os12g18900.1 |
| Ricechip | LOC_Os12g18900.1 |
| KEGG | osa:4351999 dosa:Os12t0287300-01 |
| Entrez-Gene | 4351999 |