RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g22030.1 View Network Show in Genome Browser |
| Other Names | Os12g0409000 |
| Description | serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 12392727-12396638 Nucleotide Length: 1596 |
| Protein-coding | LOC_Os12g22030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g02600 LOC_Os07g22600 LOC_Os02g27340 LOC_Os11g26850 LOC_Os04g09810 LOC_Os07g30790 LOC_Os02g36340 LOC_Os05g38570 LOC_Os08g09210 LOC_Os03g10450 LOC_Os05g38170 More.. |
| Downstream Genes | LOC_Os12g35580 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00260 rn00460 rn00630 rn00670 rn00680 rn01100 rn01120 |
| Metacyc Pathways | GLYSYN-PWY 1CMET2-PWY PWY-181 PWY-3841 PWY-3661 PWY-2161 PWY-2201 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g22030.1 |
| Rice Genome Annotation | LOC_Os12g22030.1 |
| Ricechip | LOC_Os12g22030.1 |
| KEGG | osa:4352058 dosa:Os12t0409000-01 |
| Entrez-Gene | 4352058 |