RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g22600.1 View Network Show in Genome Browser |
| Other Names | Os12g0414500 |
| Description | tRNA synthetases class II domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 12762895-12765776 Nucleotide Length: 1848 |
| Protein-coding | LOC_Os12g22600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g38980 LOC_Os02g14110 LOC_Os06g35540 LOC_Os02g55420 LOC_Os01g55540 LOC_Os04g57950 LOC_Os02g53680 LOC_Os02g42230 LOC_Os09g38772 LOC_Os10g26720 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g22600.1 |
| Rice Genome Annotation | LOC_Os12g22600.1 |
| Ricechip | LOC_Os12g22600.1 |
| KEGG | osa:4352065 dosa:Os12t0414500-01 |
| Entrez-Gene | 4352065 |