RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g29990.1 View Network Show in Genome Browser |
| Other Names | Os12g0485000 |
| Description | O-sialoglycoprotein endopeptidase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 17924519-17931694 Nucleotide Length: 1386 |
| Protein-coding | LOC_Os12g29990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g09590 LOC_Os11g05552 LOC_Os03g01760 LOC_Os08g37860 LOC_Os06g06100 LOC_Os09g38759 LOC_Os08g44210 LOC_Os05g34590 LOC_Os02g07230 LOC_Os07g12640 LOC_Os05g50930 More.. |
| Downstream Genes | LOC_Os12g43630 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167h-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g29990.1 |
| Rice Genome Annotation | LOC_Os12g29990.1 |
| Ricechip | LOC_Os12g29990.1 |
| KEGG | osa:9270395 dosa:Os12t0485000-02 |
| Entrez-Gene | 9270395 |