RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g31000.1 View Network Show in Genome Browser |
| Other Names | Os12g0493900 |
| Description | pumilio-family RNA binding repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 18618482-18621147 Nucleotide Length: 1563 |
| Protein-coding | LOC_Os12g31000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g25110 LOC_Os03g61560 LOC_Os03g57450 LOC_Os10g26660 LOC_Os09g30210 LOC_Os12g30150 LOC_Os08g39820 LOC_Os03g57510 LOC_Os07g06740 LOC_Os11g07040 LOC_Os12g07230 More.. |
| Downstream Genes | LOC_Os12g37370 LOC_Os12g43370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1848 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g31000.1 |
| Rice Genome Annotation | LOC_Os12g31000.1 |
| Ricechip | LOC_Os12g31000.1 |
| KEGG | osa:4352254 dosa:Os12t0493900-01 |
| Entrez-Gene | 4352254 |