RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g31840.1 View Network Show in Genome Browser |
| Other Names | Os12g0502700 |
| Description | ZOS12-05 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 19158097-19161631 Nucleotide Length: 1824 |
| Protein-coding | LOC_Os12g31840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g49230 LOC_Os03g40110 LOC_Os12g05760 LOC_Os09g31486 LOC_Os02g02410 LOC_Os05g30480 LOC_Os05g35400 LOC_Os03g50250 LOC_Os08g09770 LOC_Os06g10990 LOC_Os11g08460 More.. |
| Downstream Genes | LOC_Os12g38180 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 osa-miR2097-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g31840.1 |
| Rice Genome Annotation | LOC_Os12g31840.1 |
| Ricechip | LOC_Os12g31840.1 |
| KEGG | osa:4352284 dosa:Os12t0502700-01 |
| Entrez-Gene | 4352284 |