RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g34860.2 View Network Show in Genome Browser |
| Other Names | Os12g0533700 |
| Description | phenylalanyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 21220797-21226234 Nucleotide Length: 1056 |
| Protein-coding | LOC_Os12g34860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48510 LOC_Os05g45220 LOC_Os01g53280 LOC_Os08g19850 LOC_Os02g33500 LOC_Os06g43900 LOC_Os02g55120 LOC_Os02g01110 LOC_Os09g30210 LOC_Os03g45400 LOC_Os10g42860 More.. |
| Downstream Genes | LOC_Os12g35560 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g34860.2 |
| Rice Genome Annotation | LOC_Os12g34860.2 |
| Ricechip | LOC_Os12g34860.2 |
| KEGG | osa:4352408 dosa:Os12t0533700-01 |
| Entrez-Gene | 4352408 |