RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g35570.1 View Network Show in Genome Browser |
| Other Names | Os12g0540900 |
| Description | tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 21625447-21629707 Nucleotide Length: 1227 |
| Protein-coding | LOC_Os12g35570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52970 LOC_Os01g31610 LOC_Os06g43760 LOC_Os03g25450 LOC_Os03g38980 LOC_Os08g23730 LOC_Os04g51630 LOC_Os01g67134 LOC_Os10g26050 LOC_Os05g07030 LOC_Os08g02410 More.. |
| Downstream Genes | LOC_Os12g43100 LOC_Os12g38000 LOC_Os12g39070 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g35570.1 |
| Rice Genome Annotation | LOC_Os12g35570.1 |
| Ricechip | LOC_Os12g35570.1 |
| KEGG | osa:4352435 dosa:Os12t0540900-01 |
| Entrez-Gene | 4352435 |