RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g37370.1 View Network Show in Genome Browser |
| Other Names | Os12g0560400 |
| Description | DNA-directed RNA polymerase II subunit RPB9, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 22946630-22948103 Nucleotide Length: 345 |
| Protein-coding | LOC_Os12g37370 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05860 LOC_Os09g02284 LOC_Os03g44484 LOC_Os02g02510 LOC_Os10g10990 LOC_Os01g59140 LOC_Os07g07610 LOC_Os01g56550 LOC_Os05g33240 LOC_Os02g45120 LOC_Os03g60130 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os12g44390 LOC_Os12g43370 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444b.2 osa-miR444c.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g37370.1 |
| Rice Genome Annotation | LOC_Os12g37370.1 |
| Ricechip | LOC_Os12g37370.1 |
| KEGG | osa:4352511 dosa:Os12t0560400-01 |
| Entrez-Gene | 4352511 |