RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g37400.1 View Network Show in Genome Browser |
| Other Names | Os12g0560700 |
| Description | MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 22954069-22959404 Nucleotide Length: 2178 |
| Protein-coding | LOC_Os12g37400 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os11g29380 LOC_Os02g55410 LOC_Os05g39850 LOC_Os01g36390 LOC_Os12g03130 LOC_Os11g03430 LOC_Os01g63710 LOC_Os05g14590 LOC_Os06g08790 LOC_Os03g08640 LOC_Os04g10650 More.. |
| Downstream Genes | LOC_Os12g44390 LOC_Os12g39070 LOC_Os12g41250 LOC_Os12g43370 LOC_Os12g42760 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5532 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g37400.1 |
| Rice Genome Annotation | LOC_Os12g37400.1 |
| Ricechip | LOC_Os12g37400.1 |
| KEGG | osa:4352514 dosa:Os12t0560700-01 |
| Entrez-Gene | 4352514 |