RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g37410.1 View Network Show in Genome Browser |
| Other Names | Os12g0560900 |
| Description | CPuORF5 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 22967365-22968660 Nucleotide Length: 438 |
| Protein-coding | LOC_Os12g37410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g54474 LOC_Os01g59350 LOC_Os05g34050 LOC_Os01g64730 LOC_Os01g64020 LOC_Os07g08420 LOC_Os06g45140 LOC_Os03g58250 LOC_Os02g16680 LOC_Os02g07840 LOC_Os06g50310 More.. |
| Reference | |
|---|---|
| PubMed | 18065552 16051676 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g37410.1 |
| Rice Genome Annotation | LOC_Os12g37410.1 |
| Ricechip | LOC_Os12g37410.1 |
| Entrez-Gene | 9271102 |