RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g38000.1 View Network Show in Genome Browser |
| Other Names | Os12g0567700 |
| Description | 60S ribosomal protein L8, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 23349992-23351879 Nucleotide Length: 786 |
| Protein-coding | LOC_Os12g38000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g59310 LOC_Os11g29190 LOC_Os01g24690 LOC_Os09g08430 LOC_Os02g27760 LOC_Os03g22180 LOC_Os07g10720 LOC_Os05g30530 LOC_Os03g18570 LOC_Os05g27940 LOC_Os03g18580 More.. |
| Downstream Genes | LOC_Os12g42180 LOC_Os12g38310 LOC_Os12g41400 LOC_Os12g38380 LOC_Os12g39860 LOC_Os12g42370 LOC_Os12g40130 LOC_Os12g43100 LOC_Os12g43300 LOC_Os12g44150 LOC_Os12g43370 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2926 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g38000.1 |
| Rice Genome Annotation | LOC_Os12g38000.1 |
| Ricechip | LOC_Os12g38000.1 |
| KEGG | osa:4352560 dosa:Os12t0567700-01 |
| Entrez-Gene | 4352560 |