RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g38380.1 View Network Show in Genome Browser |
| Other Names | Os12g0571900 |
| Description | tetratricopeptide repeat containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 23545363-23554545 Nucleotide Length: 2196 |
| Protein-coding | LOC_Os12g38380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g48310 LOC_Os02g12570 LOC_Os06g21470 LOC_Os06g13999 LOC_Os06g13839 LOC_Os11g16540 LOC_Os11g41890 LOC_Os09g39590 LOC_Os03g63590 LOC_Os01g72220 LOC_Os04g18010 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR395c osa-miR171f-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g38380.1 |
| Rice Genome Annotation | LOC_Os12g38380.1 |
| Ricechip | LOC_Os12g38380.1 |
| KEGG | osa:4352587 dosa:Os12t0571900-01 |
| Entrez-Gene | 4352587 |