RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g38630.1 View Network Show in Genome Browser |
| Other Names | Os12g0574900 |
| Description | asparagine synthase family protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 23729900-23734896 Nucleotide Length: 1980 |
| Protein-coding | LOC_Os12g38630 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g15420 LOC_Os03g18130 LOC_Os06g23430 LOC_Os02g49780 LOC_Os02g04050 LOC_Os03g15650 LOC_Os07g13280 LOC_Os09g12310 LOC_Os03g42010 LOC_Os07g31140 LOC_Os04g48750 More.. |
| Downstream Genes | LOC_Os12g41620 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 rn00910 rn01100 rn01110 rn01120 |
| Metacyc Pathways | ASPARAGINE-BIOSYNTHESIS ASPARAGINESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g38630.1 |
| Rice Genome Annotation | LOC_Os12g38630.1 |
| Ricechip | LOC_Os12g38630.1 |
| KEGG | osa:4352605 dosa:Os12t0574900-01 |
| Entrez-Gene | 4352605 |