RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g38900.1 View Network Show in Genome Browser |
| Other Names | Os12g0578200 |
| Description | chorismate mutase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 23918907-23923368 Nucleotide Length: 999 |
| Protein-coding | LOC_Os12g38900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os11g39670 LOC_Os10g42299 LOC_Os09g26180 LOC_Os03g11120 LOC_Os02g07040 LOC_Os11g29400 LOC_Os06g02144 LOC_Os02g04660 LOC_Os03g15780 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | PHESYN |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g38900.1 |
| Rice Genome Annotation | LOC_Os12g38900.1 |
| Ricechip | LOC_Os12g38900.1 |
| KEGG | osa:4352624 dosa:Os12t0578200-01 |
| Entrez-Gene | 4352624 |