RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g39120.1 View Network Show in Genome Browser |
| Other Names | Os12g0580900 |
| Description | protein phosphatase 2C, putative, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 24066293-24069860 Nucleotide Length: 1179 |
| Protein-coding | LOC_Os12g39120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os06g48300 LOC_Os04g56450 LOC_Os05g50970 LOC_Os02g15594 LOC_Os02g50620 LOC_Os10g11140 LOC_Os03g59470 LOC_Os03g18150 LOC_Os06g33549 LOC_Os02g58030 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 osa-miR156k |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g39120.1 |
| Rice Genome Annotation | LOC_Os12g39120.1 |
| Ricechip | LOC_Os12g39120.1 |
| KEGG | osa:4352638 dosa:Os12t0580900-01 |
| Entrez-Gene | 4352638 |