RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os12g39340.1 View Network Show in Genome Browser |
| Other Names | Os12g0583000 |
| Description | glycosyl transferase, group 1 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr12 CDS Coordinates (5'-3'): 24204768-24208276 Nucleotide Length: 1374 |
| Protein-coding | LOC_Os12g39340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g08300 LOC_Os07g16960 LOC_Os06g36890 LOC_Os05g32630 LOC_Os02g40870 LOC_Os09g12530 LOC_Os08g20660 LOC_Os07g01030 LOC_Os04g34000 LOC_Os03g11560 LOC_Os01g69030 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00563 rn01100 |
| Metacyc Pathways | PWY-5338 PWY-2901 PWY-2881 PWY-2902 |
| Database Links | |
|---|---|
| Gramene | LOC_Os12g39340.1 |
| Rice Genome Annotation | LOC_Os12g39340.1 |
| Ricechip | LOC_Os12g39340.1 |
| KEGG | osa:4352649 dosa:Os12t0583000-01 |
| Entrez-Gene | 4352649 |